Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs10441776 chr9:97246795 A/G 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs10460853 chr3:147142723 A/G 0.00018 119 46.07 32.7 20.27 KM Plot
THYM rs1046314 chr4:6303955 A/G 2.5E-6 119 49.73 40.78 25.83 KM Plot
THYM rs1046320 chr4:6304344 C/T 9.64E-5 119 27.13 46.27 45.58 KM Plot
THYM rs10469986 chr2:30857899 C/G 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs10469987 chr2:30859452 A/C 1.75E-8 118 36.03 50.1 33.13 KM Plot
THYM rs10471184 chr4:187122904 C/T 1.1E-8 119 42.82 35.07 12.63 KM Plot
THYM rs1047665 chr6:151422955 A/G 0 119 38.13 55.1 4.13 KM Plot
THYM rs1047970 chr4:76407219 T/C 8.69E-6 118 40.3 41.7 39.55 KM Plot
THYM rs1048940 chr3:48725707 C/T 1.51E-8 118 42.25 35 12.63 KM Plot
THYM rs10491461 chr4:78152308 G/A 1.31E-5 114 38.83 46.6 31.72 KM Plot
THYM rs10494322 chr1:159336948 C/T 2.41E-7 119 28.43 34.87 46.27 KM Plot
THYM rs10494421 chr1:164738727 C/T 2.16E-13 119 37.13 58.7 6 KM Plot
THYM rs10510761 chr3:52965255 A/G 0.000223 119 25.63 23.75 42.9 KM Plot
THYM rs10512235 chr9:97549812 A/G 8.14E-5 119 41.22 39.28 28.43 KM Plot